Workshop Schedulue

 

 

DAY 1
Wed., March 8, 2017
DAY 2 
Thurs., March 9, 2017
DAY 3
Fri., March 10, 2017
DAY 4 
Sat., March 11, 2017
DAY 5
Sun., March 12, 2017
TOPIC Introduction to the Workshop SNPs discovery SNPs filtering Population Structure Analyses Population Parameter Estimates
09:00-10:15 Introductions: Participants Intro to Trimming Finalize VCF File AMOVA Relatedness Estimation
Introductions: Mechanics
of the workshop
Trimming for Assembly
of Reference Genome

10:15-10:30


Coffee Break

Coffee Break Coffee Break Coffee Break Coffee Break
10:30-12:00

DdRAD and ezRAD: An
introduction and discussion 
(side topics: enzyme 

optimization,sequencing options)

Intro to De novo
Reference Assembly
Filtering SNPs with VCF tools

AMOVA

Relatedness
De novo Reference Assembly I
12:00-13:30 Break for lunch Break for lunch Break for lunch Break for lunch Break for lunch
13:30-14:15 Terminal is your friend:
Getting to know your data
De novo Reference Assembly II Filtering SNPs with VCF tools STUCTURE Ne Estimator
14:15-14:30 Demultiplexing Introduction
15:15-15:30 Coffee Break Coffee Break Coffee Break Coffee Break Coffee Break
15:30-17:30 Demultiplexing:
1. Process rad tags
2. Removal of low SEQ success
3. Splitting excessive reads
Mapping More Filtering STRUCTURE Effects of Relatedness on NE
Genotyping Open Question Session Open Question Session Open Question Session
17:30 Summary of the day's
actvities
Summary of the day's actvities Summary of the day's actvities Summary of the day's actvities Summary of the day's actvities

KEY
             Lecture Room
  Computer Room

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