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DAY 1 Wed., March 8, 2017 |
DAY 2 Thurs., March 9, 2017 |
DAY 3 Fri., March 10, 2017 |
DAY 4 Sat., March 11, 2017 |
DAY 5 Sun., March 12, 2017 |
| TOPIC | Introduction to the Workshop | SNPs discovery | SNPs filtering | Population Structure Analyses | Population Parameter Estimates |
| 09:00-10:15 | Introductions: Participants | Intro to Trimming | Finalize VCF File | AMOVA | Relatedness Estimation |
| Introductions: Mechanics of the workshop |
Trimming for Assembly of Reference Genome |
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10:15-10:30 |
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Coffee Break | Coffee Break | Coffee Break | Coffee Break |
| 10:30-12:00 |
DdRAD and ezRAD: An |
Intro to De novo Reference Assembly |
Filtering SNPs with VCF tools |
AMOVA |
Relatedness |
| De novo Reference Assembly I | |||||
| 12:00-13:30 | Break for lunch | Break for lunch | Break for lunch | Break for lunch | Break for lunch |
| 13:30-14:15 | Terminal is your friend: Getting to know your data |
De novo Reference Assembly II | Filtering SNPs with VCF tools | STUCTURE | Ne Estimator |
| 14:15-14:30 | Demultiplexing Introduction | ||||
| 15:15-15:30 | Coffee Break | Coffee Break | Coffee Break | Coffee Break | Coffee Break |
| 15:30-17:30 | Demultiplexing: 1. Process rad tags 2. Removal of low SEQ success 3. Splitting excessive reads |
Mapping | More Filtering | STRUCTURE | Effects of Relatedness on NE |
| Genotyping | Open Question Session | Open Question Session | Open Question Session | ||
| 17:30 | Summary of the day's actvities |
Summary of the day's actvities | Summary of the day's actvities | Summary of the day's actvities | Summary of the day's actvities |
| KEY | |
| Lecture Room | |
| Computer Room | |
